Unique New Species of Marine Bacteria Discovered in Deep-Sea Cold Seep

by Mateo Gonzalez
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Deep-sea microbial ecology

A recently published study in the journal eLife presents a groundbreaking discovery in the realm of marine microbiology. A novel species of marine bacteria, designated as Poriferisphaera hetertotrophicis, has been identified by researchers. This newly found bacterium exhibits several remarkable traits, contributing to our understanding of deep-sea microbial processes.

At the heart of this finding lies the unique method by which Poriferisphaera hetertotrophicis reproduces. Unlike its microbial counterparts, this species employs a distinctive budding mechanism for cell division. This characteristic sets it apart as the sole known member within the class of Phycisphaerae bacteria to utilize such an unconventional model of division.

However, this bacterium’s singularity extends beyond its reproductive strategy. It plays a substantial role in the assimilation of nitrogen, a crucial element in the building blocks of life such as nucleic acids, amino acids, and proteins. Notably, Poriferisphaera hetertotrophicis engages in a symbiotic relationship with a chronic virus known as a bacteriophage. This bacteriophage acts as a facilitator of nitrogen metabolism, further enhancing the bacterium’s involvement in this essential biochemical cycle.

The study’s lead author, Rikuan Zheng, affiliated with the Institute of Oceanology at the Chinese Academy of Sciences in Beijing and the National Laboratory for Marine Science and Technology in Qingdao, China, highlights the significance of this discovery. Notably, research on the Planctomycetes bacteria family had previously concentrated on strains in freshwater and shallow ocean environments due to logistical complexities linked with sampling and cultivating deep-sea strains.

To isolate this novel bacterium, researchers collected sediment samples from a deep-sea cold seep habitat known to harbor Planctomycetes bacteria. They stimulated the bacterium’s growth using a specialized nutrient-rich medium supplemented with nitrogen sources and the antibiotic rifampicin. Through this approach, they cultivated the bacteria on agar, allowing for the thorough evaluation of individual colonies through gene sequencing.

Among the bacterial colonies, a strain named ZRK32 emerged as distinct due to its rapid growth. Genetic comparisons confirmed its affiliation with the genus Poriferisphaera. The team’s meticulous analysis led to the proposal of a new species name: Poriferisphaera hetertotrophicis.

Intriguingly, Poriferisphaera hetertotrophicis showcased a remarkable ability to thrive in nutrient-rich environments, differing from other members of the Planctomycetes family. Its method of multiplication involved budding, where parent cells produced outgrowth buds that matured into daughter cells.

Considering the essential role that Planctomycetes bacteria play in nitrogen cycling, researchers explored whether this was true for Poriferisphaera hetertotrophicis. Their investigations revealed that nitrogen, when supplied in the forms of nitrate or ammonia, enhanced bacterial growth, while nitrite inhibited it. Notably, the introduction of nitrate or ammonia triggered the release of a bacteriophage named phage-ZRK32. This virus displayed the ability to significantly boost the growth of Poriferisphaera hetertotrophicis and other marine bacteria by promoting nitrogen metabolism. This symbiotic relationship between bacterium and virus could potentially optimize the nitrogen assimilation process.

In conclusion, the identification of Poriferisphaera hetertotrophicis marks a significant advancement in our comprehension of deep-sea microbial ecology. This bacterium’s unique budding division method, coupled with its role in nitrogen metabolism facilitated by a chronic bacteriophage, presents a new avenue for studying the intricate interactions between bacteria and viruses in the marine environment. This study, authored by a team of researchers led by Chaomin Sun, a Professor at the Institute of Oceanology within the Chinese Academy of Sciences, sets a noteworthy precedent for future investigations into the microbial world beneath the ocean’s depths.

Frequently Asked Questions (FAQs) about Deep-sea microbial ecology

What is the significance of the recent discovery in marine microbiology?

The recent discovery involves a novel marine bacterium, Poriferisphaera hetertotrophicis, which stands out due to its unique budding division model. It also maintains a symbiotic relationship with a bacteriophage, enhancing nitrogen metabolism. These findings significantly advance our understanding of deep-sea microbial ecology.

How does Poriferisphaera hetertotrophicis differ from other bacteria in the same family?

Poriferisphaera hetertotrophicis distinguishes itself through its singular method of cell division, utilizing a distinctive budding mechanism. This sets it apart as the sole known species in its class to adopt this unconventional division model, contributing to its uniqueness in the Planctomycetes family.

What role does Poriferisphaera hetertotrophicis play in nitrogen assimilation?

The bacterium plays a substantial role in nitrogen assimilation, a crucial process that contributes to the formation of nucleic acids, amino acids, and proteins—the building blocks of life. It engages in a symbiotic relationship with a chronic bacteriophage that facilitates nitrogen metabolism, enhancing its involvement in this essential biochemical cycle.

How was Poriferisphaera hetertotrophicis discovered and isolated?

Researchers collected sediment samples from a deep-sea cold seep habitat known for hosting Planctomycetes bacteria. They cultivated the bacterium using a specialized nutrient-rich medium supplemented with nitrogen sources and the antibiotic rifampicin. The resulting strain, ZRK32, exhibited distinctive growth characteristics, leading to the proposal of the new species name, Poriferisphaera hetertotrophicis.

What are the potential implications of the bacteriophage’s role?

The bacteriophage, named phage-ZRK32, plays a crucial role in boosting the growth of Poriferisphaera hetertotrophicis and other marine bacteria by enhancing nitrogen metabolism. This symbiotic relationship between the bacterium and virus could optimize the nitrogen assimilation process, showcasing the intricate interplay between microbes and their viral counterparts.

How does this discovery contribute to our knowledge of deep-sea microbiology?

The discovery of Poriferisphaera hetertotrophicis sheds light on the complexities of deep-sea microbial ecology. Its unique budding division model and symbiotic relationship with a bacteriophage provide a novel avenue for studying microbial interactions in the marine environment. This research sets a significant precedent for future investigations into the microbial world beneath the ocean’s depths.

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